Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_708

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9075 and 9076 are separated by 288 nucleotides mRNA_707: 9075 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 1,689,670 to 1,691,771 9075 mRNA_708: 9076 - HMMPfam-Ferritin-like domain-PF13668, at 1,692,060 to 1,693,397 9076

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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1,691,113 - 9075 mRNA_707 0.69 +1.9
1,691,121 - 9075 mRNA_707 0.69 -1.9
1,691,491 + 9075 mRNA_707 0.87 +1.1
1,691,503 - 9075 mRNA_707 0.87 +0.3
1,691,504 + 9075 mRNA_707 0.87 +0.2
1,691,772 + -0.4
1,692,019 + +0.4
1,692,040 + -0.2
1,692,200 + 9076 mRNA_708 0.10 -1.4
1,692,290 + 9076 mRNA_708 0.17 -2.0
1,692,340 + 9076 mRNA_708 0.21 -0.3
1,692,481 + 9076 mRNA_708 0.31 +0.1
1,692,484 - 9076 mRNA_708 0.32 -0.1
1,692,517 - 9076 mRNA_708 0.34 -0.1
1,692,726 - 9076 mRNA_708 0.50 +0.2
1,692,747 + 9076 mRNA_708 0.51 +2.1
1,692,748 + 9076 mRNA_708 0.51 +0.2
1,692,797 - 9076 mRNA_708 0.55 -1.2
1,692,936 + 9076 mRNA_708 0.65 -0.8
1,692,944 + 9076 mRNA_708 0.66 -3.6
1,693,075 - 9076 mRNA_708 0.76 +0.3
1,693,203 - 9076 mRNA_708 0.85 +0.2
1,693,206 - 9076 mRNA_708 0.86 -2.4
1,693,206 + 9076 mRNA_708 0.86 -1.8
1,693,810 - -1.3
1,693,925 - -0.5
1,693,943 + -0.1
1,694,054 - +1.2
1,694,065 - +0.6
1,694,096 + +0.9
1,694,105 - -0.3
1,694,131 + -0.0
1,694,133 - -2.4
1,694,140 - +1.0

Or see this region's nucleotide sequence