Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_923

Experiment: Sorted High BODIPY Gate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9290 and 9291 are separated by 456 nucleotides9291 and 9292 are separated by 317 nucleotides mRNA_922: 9290 - K06110 EXOC3, SEC6 exocyst complex component 3, at 2,198,886 to 2,201,562 9290 mRNA_923: 9291 - K03446 emrB MFS transporter, DHA2 family, multidrug resistance protein, at 2,202,019 to 2,204,450 9291 mRNA_924: 9292 - KOG0798 Uncharacterized conserved protein, at 2,204,768 to 2,206,248 9292

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
remove
2,201,324 + -0.7
2,201,464 + +1.3
2,201,471 + +0.7
2,201,475 + -1.2
2,201,529 + -1.4
2,201,581 + +0.7
2,201,593 - -0.7
2,201,703 - +0.5
2,201,704 + -1.2
2,201,708 + -1.0
2,201,712 - +0.3
2,201,722 - +0.2
2,201,782 - -0.0
2,201,798 + +1.1
2,201,867 - -0.8
2,201,884 + -0.4
2,201,907 - -0.2
2,201,907 - +2.9
2,201,914 + +1.5
2,201,924 - -1.0
2,201,927 + +0.3
2,201,933 + +0.7
2,201,934 + +1.5
2,202,006 - -0.5
2,202,015 + -2.8
2,202,026 - -2.9
2,202,038 + +0.3
2,202,053 + +1.2
2,202,065 - +0.7
2,202,187 - +0.1
2,202,199 - -1.5
2,202,202 - -1.9
2,202,302 + 9291 mRNA_923 0.12 +1.1
2,202,305 + 9291 mRNA_923 0.12 -2.2
2,202,333 - 9291 mRNA_923 0.13 -2.4
2,202,336 - 9291 mRNA_923 0.13 +0.2
2,202,357 + 9291 mRNA_923 0.14 -0.4
2,202,365 - 9291 mRNA_923 0.14 +0.0
2,202,476 - 9291 mRNA_923 0.19 -0.4
2,202,602 + 9291 mRNA_923 0.24 -1.3
2,202,605 - 9291 mRNA_923 0.24 +1.8
2,202,623 + 9291 mRNA_923 0.25 +1.3
2,202,643 + 9291 mRNA_923 0.26 +1.7
2,202,749 - 9291 mRNA_923 0.30 +0.6
2,202,755 + 9291 mRNA_923 0.30 -0.8
2,202,942 + 9291 mRNA_923 0.38 -1.1
2,202,956 + 9291 mRNA_923 0.39 +0.8
2,202,986 + 9291 mRNA_923 0.40 +1.3
2,203,053 - 9291 mRNA_923 0.43 +1.1
2,203,053 - 9291 mRNA_923 0.43 +0.0
2,203,079 - 9291 mRNA_923 0.44 -0.4
2,203,147 - 9291 mRNA_923 0.46 +0.9
2,203,189 - 9291 mRNA_923 0.48 -1.2
2,203,196 + 9291 mRNA_923 0.48 -0.2
2,203,196 + 9291 mRNA_923 0.48 -1.0
2,203,242 + 9291 mRNA_923 0.50 -1.4
2,203,274 + 9291 mRNA_923 0.52 -0.8
2,203,282 - 9291 mRNA_923 0.52 -1.1
2,203,282 + 9291 mRNA_923 0.52 +0.1
2,203,389 - 9291 mRNA_923 0.56 -0.4
2,203,405 - 9291 mRNA_923 0.57 -0.5
2,203,426 + 9291 mRNA_923 0.58 -1.9
2,203,492 + 9291 mRNA_923 0.61 +1.2
2,203,544 - 9291 mRNA_923 0.63 -1.9
2,203,583 - 9291 mRNA_923 0.64 -0.3
2,203,596 - 9291 mRNA_923 0.65 -0.5
2,203,622 + 9291 mRNA_923 0.66 -0.4
2,203,668 - 9291 mRNA_923 0.68 +1.2
2,203,668 - 9291 mRNA_923 0.68 -0.3
2,203,689 - 9291 mRNA_923 0.69 -1.3
2,203,691 - 9291 mRNA_923 0.69 +0.2
2,203,778 + 9291 mRNA_923 0.72 -1.6
2,203,780 + 9291 mRNA_923 0.72 -0.5
2,203,782 - 9291 mRNA_923 0.72 +0.3
2,203,784 + 9291 mRNA_923 0.73 -0.8
2,203,792 + 9291 mRNA_923 0.73 -0.2
2,203,841 - 9291 mRNA_923 0.75 +0.1
2,203,928 + 9291 mRNA_923 0.78 +0.7
2,204,089 - 9291 mRNA_923 0.85 -1.3
2,204,099 + 9291 mRNA_923 0.86 -1.1
2,204,102 - 9291 mRNA_923 0.86 +1.4
2,204,176 + 9291 mRNA_923 0.89 +0.7
2,204,178 - 9291 mRNA_923 0.89 +1.3
2,204,290 + -1.1
2,204,323 - -2.8
2,204,371 - +0.5
2,204,371 - -0.9
2,204,371 + +0.7
2,204,398 + +0.7
2,204,409 - -0.5
2,204,424 - +0.2
2,204,495 - -1.1
2,204,542 - -0.0
2,204,604 + -0.7
2,204,640 - -0.3
2,204,644 + -0.2
2,204,649 - +0.1
2,204,674 - +0.3
2,204,679 - +0.8
2,204,682 - +0.2
2,204,685 + -2.5
2,204,686 - -0.0
2,204,737 + -0.7
2,204,737 + -0.6
2,204,886 - -0.3
2,204,990 + 9292 mRNA_924 0.15 -2.3
2,205,017 + 9292 mRNA_924 0.17 -0.6
2,205,022 - 9292 mRNA_924 0.17 +0.9
2,205,115 - 9292 mRNA_924 0.23 -1.2
2,205,210 + 9292 mRNA_924 0.30 -0.2

Or see this region's nucleotide sequence