Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_930

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9298 and 9299 are separated by 237 nucleotides mRNA_930: 9298 - K00861 RFK, FMN1 riboflavin kinase, at 359 to 1,600 9298 mRNA_931: 9299 - K14794 RRP12 ribosomal RNA-processing protein 12, at 1,838 to 6,021 9299

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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1 + +0.4
1 + -0.5
1 + -1.0
1 + +0.7
1 + +1.2
2 + -0.1
2 + +0.1
5 + +0.2
18 + -0.3
30 + -0.9
37 + -0.4
37 + -1.1
41 + +0.3
42 + -1.2
44 + +2.0
49 + -1.4
49 + -0.2
50 + +0.1
54 + +0.3
58 - -0.3
60 - -0.4
60 + +0.5
60 - +0.5
61 - -1.5
61 + -1.5
63 + -0.3
63 + -0.6
63 + -0.6
63 + +1.2
63 + +0.5
63 + -0.5
64 + +0.2
66 - -1.7
66 + -2.4
70 + +0.0
70 + -0.6
70 - +0.3
71 + -0.4
73 + +1.0
75 - +0.6
77 - -1.1
78 + -2.8
78 - -1.0
78 + -0.7
78 + +0.3
78 + -1.2
78 + -2.1
78 + -0.5
78 + +0.5
78 + -2.5
79 + -1.9
81 - -0.1
81 - +0.5
82 + +0.9
85 + +0.1
104 + -0.7
126 + -0.5
126 + +3.3
128 - +1.5
135 + -1.2
142 + +0.2
150 + +0.0
154 + -0.9
157 + +1.9
171 - -0.5
171 + +0.0
172 + +0.9
172 + +0.2
175 - -0.8
176 - -0.0
177 - -1.0
177 - +0.2
191 - +0.2
192 + -0.4
192 + -0.2
192 + +0.7
193 + +0.6
193 + +0.4
193 + -1.9
198 - -0.7
218 + -0.8
225 + -0.7
235 + -0.7
242 + -0.7
263 - -0.6
293 + -1.6
303 + +0.1
333 - -0.4
339 - +1.5
348 + +0.1
349 + -1.1
377 - -0.1
381 - -0.8
469 + -1.5
487 - 9298 mRNA_930 0.10 -1.4
722 + 9298 mRNA_930 0.29 -1.2
1,641 - +0.1
1,656 - -0.5
1,768 - +0.1
1,778 - +2.2
1,794 + -0.5

Or see this region's nucleotide sequence