Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_987

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9354 and 9355 are separated by 534 nucleotides9355 and 9356 are separated by 153 nucleotides mRNA_986: 9354 - K03781 katE, CAT, catB, srpA catalase, at 136,496 to 139,711 9354 mRNA_987: 9355 - K04773 sppA protease IV, at 140,246 to 143,358 9355 mRNA_988: 9356 - BLAST glycerol-3-phosphate O-acyltransferase [Sanghuangporu..., at 143,512 to 144,351 9356

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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139,372 + 9354 mRNA_986 0.89 -1.0
139,377 + 9354 mRNA_986 0.90 -0.2
139,418 - +1.1
139,569 + -0.3
139,737 + -1.0
140,164 + +0.4
140,186 + +0.1
140,384 - -1.4
140,764 + 9355 mRNA_987 0.17 -0.0
141,214 - 9355 mRNA_987 0.31 -0.2
141,872 + 9355 mRNA_987 0.52 +0.7
142,205 + 9355 mRNA_987 0.63 +0.0
142,241 - 9355 mRNA_987 0.64 +2.4
142,272 + 9355 mRNA_987 0.65 -0.5
142,393 + 9355 mRNA_987 0.69 +0.2
142,406 + 9355 mRNA_987 0.69 -0.6
142,663 + 9355 mRNA_987 0.78 +0.2
142,673 - 9355 mRNA_987 0.78 +0.2
142,895 + 9355 mRNA_987 0.85 +0.5
142,963 + 9355 mRNA_987 0.87 -1.3
143,099 - -0.6
143,122 - -0.0
143,283 - -0.9
143,401 - -1.0
143,416 + -2.7
143,434 + -2.3
143,435 + -1.3
143,436 + -0.6
143,735 - 9356 mRNA_988 0.27 -5.3
143,738 - 9356 mRNA_988 0.27 -2.9
144,277 + -1.0

Or see this region's nucleotide sequence