Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1010

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9377 and 9378 are separated by 659 nucleotides mRNA_1009: 9377 - K12659 ARG56 N-acetyl-gamma-glutamyl-phosphate reductase / acetylglutamate kinase, at 194,159 to 197,453 9377 mRNA_1010: 9378 - K16569 TUBGCP2, GCP2 gamma-tubulin complex component 2, at 198,113 to 201,234 9378

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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197,224 + -6.2
197,237 - -3.0
197,345 + -3.6
197,449 - -0.6
197,506 - +0.4
201,349 + -0.8
201,370 - -1.4
201,477 - +0.9
201,497 - +0.4
201,522 + -1.8
201,530 + +0.1
201,531 + -1.2
201,544 - -1.1
201,548 + +0.2
201,673 + +0.7
201,683 - -0.8
201,688 + -3.3
201,690 + -0.5
201,708 - -0.0
201,835 + -1.7
201,839 - -0.5
201,966 - +0.4
202,107 - +0.3
202,111 - -0.2
202,112 + +0.1
202,135 + +0.0
202,142 - +0.7

Or see this region's nucleotide sequence