Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1017

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9384 and 9385 are separated by 200 nucleotides9385 and 9386 are separated by 248 nucleotides mRNA_1016: 9384 - K14833 NOC2 nucleolar complex protein 2, at 214,946 to 217,442 9384 mRNA_1017: 9385 - BLAST putative pre-mrna-splicing factor 38b [Diaporthe ampe..., at 217,643 to 219,086 9385 mRNA_1018: 9386 - KOG3488 Dolichol phosphate-mannose regulatory protein (DPM2), at 219,335 to 219,910 9386

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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217,450 - -0.1
217,897 + 9385 mRNA_1017 0.18 -2.9
219,040 + -0.7
219,173 + +0.6
219,319 + -0.0
219,331 - -0.5
219,928 + -1.7
220,042 + -0.9
220,046 + -0.1

Or see this region's nucleotide sequence