Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1076

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9443 and 9444 are separated by 248 nucleotides9444 and 9445 are separated by 395 nucleotides mRNA_1075: 9443 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383, at 347,170 to 348,411 9443 mRNA_1076: 9444 - K02324 POLE1 DNA polymerase epsilon subunit 1, at 348,660 to 356,355 9444 mRNA_1077: 9445 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 356,751 to 359,055 9445

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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347,683 - 9443 mRNA_1075 0.41 +0.0
347,694 - 9443 mRNA_1075 0.42 +0.0
347,980 - 9443 mRNA_1075 0.65 -1.9
348,168 + 9443 mRNA_1075 0.80 -0.8
348,276 + 9443 mRNA_1075 0.89 -3.7
348,383 + -0.2
348,414 - -0.5
348,443 + -1.5
348,464 - -1.2
348,476 - -0.4
348,495 + +0.3
348,520 - +0.1
348,621 + +0.1
348,691 - +0.3
356,462 + -1.0
356,507 - +0.3
356,512 - +1.5
356,521 + +0.3
356,526 - -2.6
356,526 - -1.1
356,528 + +0.3
356,538 + -0.2
356,553 + +1.1
356,643 - -1.4
356,822 - -1.6
356,838 + +0.2
356,838 + -0.1
356,839 + -0.0
357,110 + 9445 mRNA_1077 0.16 -1.1
357,117 + 9445 mRNA_1077 0.16 -1.1
357,129 - 9445 mRNA_1077 0.16 -2.4

Or see this region's nucleotide sequence