Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1173

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9540 and 9541 are separated by 206 nucleotides9541 and 9542 are separated by 501 nucleotides mRNA_1172: 9540 - KOG2277 S-M checkpoint control protein CID1 and related nucleotidyltransferases, at 571,334 to 573,898 9540 mRNA_1173: 9541 - Hypothetical Protein, at 574,105 to 575,221 9541 mRNA_1174: 9542 - K15190 MEPCE, BCDIN3 7SK snRNA methylphosphate capping enzyme, at 575,723 to 577,057 9542

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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573,206 + 9540 mRNA_1172 0.73 -0.9
573,262 - 9540 mRNA_1172 0.75 -0.1
573,325 - 9540 mRNA_1172 0.78 +0.3
573,385 + 9540 mRNA_1172 0.80 -0.1
573,502 + 9540 mRNA_1172 0.85 +0.1
573,546 + 9540 mRNA_1172 0.86 +1.0
573,865 + -0.3
573,919 + -0.5
573,927 + +0.2
573,929 - -2.1
574,023 + +0.0
574,242 + 9541 mRNA_1173 0.12 -4.3
574,256 - 9541 mRNA_1173 0.14 +1.7
574,303 + 9541 mRNA_1173 0.18 -2.3
574,314 - 9541 mRNA_1173 0.19 -1.2
574,406 + 9541 mRNA_1173 0.27 +0.1
574,457 - 9541 mRNA_1173 0.32 +0.6
574,465 + 9541 mRNA_1173 0.32 +0.2
574,482 + 9541 mRNA_1173 0.34 -2.6
574,491 - 9541 mRNA_1173 0.35 -1.3
574,541 - 9541 mRNA_1173 0.39 -0.7
574,594 + 9541 mRNA_1173 0.44 -0.3
574,616 - 9541 mRNA_1173 0.46 -0.2
574,643 - 9541 mRNA_1173 0.48 +0.3
574,652 + 9541 mRNA_1173 0.49 +0.6
574,656 + 9541 mRNA_1173 0.49 +0.0
574,673 - 9541 mRNA_1173 0.51 -1.3
574,816 + 9541 mRNA_1173 0.64 +0.4
574,822 + 9541 mRNA_1173 0.64 -0.3
574,822 + 9541 mRNA_1173 0.64 -1.5
574,834 + 9541 mRNA_1173 0.65 -0.1
574,854 - 9541 mRNA_1173 0.67 -1.3
574,956 - 9541 mRNA_1173 0.76 -0.5
575,087 + 9541 mRNA_1173 0.88 +0.1
575,153 - -1.4
575,203 + +0.9
575,221 + +0.1
575,245 + -0.2
575,388 + -0.7
575,403 + -0.6
575,546 + -0.7
575,673 + -1.1
575,685 - -0.3
575,685 - -1.4
575,688 + -0.1
575,805 - -0.0
575,824 + +0.6
575,967 + 9542 mRNA_1174 0.18 -0.4
575,973 - 9542 mRNA_1174 0.19 -0.8
576,172 - 9542 mRNA_1174 0.34 -1.1
576,184 + 9542 mRNA_1174 0.35 +2.0

Or see this region's nucleotide sequence