Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1194

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9561 and 9562 are separated by 441 nucleotides9562 and 9563 are separated by 469 nucleotides mRNA_1193: 9561 - KOG2504 Monocarboxylate transporter, at 618,729 to 620,711 9561 mRNA_1194: 9562 - K05925 METTL3_14 mRNA (2'-O-methyladenosine-N6-)-methyltransferase, at 621,153 to 623,607 9562 mRNA_1195: 9563 - K03248 EIF3G translation initiation factor 3 subunit G, at 624,077 to 625,434 9563

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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620,167 - 9561 mRNA_1193 0.73 -0.3
620,190 + 9561 mRNA_1193 0.74 -0.4
620,190 + 9561 mRNA_1193 0.74 -2.3
620,191 - 9561 mRNA_1193 0.74 -0.6
620,254 - 9561 mRNA_1193 0.77 -0.3
620,450 - 9561 mRNA_1193 0.87 -1.3
620,542 + -1.1
620,584 - +0.8
620,724 - +0.2
620,875 + -0.4
620,885 + -1.4
621,036 + -1.3
621,055 - -0.6
621,057 + +1.2
621,163 - -1.2
621,192 + -0.0
621,305 + -1.1
621,397 + +1.0
621,398 + +0.5
621,695 - 9562 mRNA_1194 0.22 +0.6
621,735 + 9562 mRNA_1194 0.24 +0.0
621,745 + 9562 mRNA_1194 0.24 -0.4
621,749 + 9562 mRNA_1194 0.24 -1.1
621,781 + 9562 mRNA_1194 0.26 -0.4
621,788 + 9562 mRNA_1194 0.26 -0.7
621,907 - 9562 mRNA_1194 0.31 -0.9
621,984 - 9562 mRNA_1194 0.34 -1.7
621,984 - 9562 mRNA_1194 0.34 +0.3
622,015 + 9562 mRNA_1194 0.35 +0.0
622,048 - 9562 mRNA_1194 0.36 -0.1
622,497 + 9562 mRNA_1194 0.55 -0.7
622,564 - 9562 mRNA_1194 0.57 +0.9
622,598 - 9562 mRNA_1194 0.59 +0.4
622,789 - 9562 mRNA_1194 0.67 -0.4
622,792 + 9562 mRNA_1194 0.67 -1.3
622,933 + 9562 mRNA_1194 0.73 -1.2
623,205 - 9562 mRNA_1194 0.84 -1.8
623,211 - 9562 mRNA_1194 0.84 -2.1
623,643 - +0.1
623,644 - -0.5
623,647 - -1.7
623,672 + +1.4
623,791 + -0.5
623,851 + -0.1
623,854 + -0.6
624,089 - +0.5

Or see this region's nucleotide sequence