Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1218

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9585 and 9586 are separated by 503 nucleotides9586 and 9587 are separated by 189 nucleotides mRNA_1217: 9585 - K10580 UBE2N, BLU, UBC13 ubiquitin-conjugating enzyme E2 N, at 672,006 to 672,875 9585 mRNA_1218: 9586 - SUPERFAMILY--SSF52047, at 673,379 to 675,043 9586 mRNA_1219: 9587 - KOG3202 SNARE protein TLG1/Syntaxin 6, at 675,233 to 676,117 9587

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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672,446 + 9585 mRNA_1217 0.51 -1.2
672,625 + 9585 mRNA_1217 0.71 -2.5
672,649 - 9585 mRNA_1217 0.74 -2.5
672,749 + 9585 mRNA_1217 0.85 +0.1
672,755 + 9585 mRNA_1217 0.86 -2.3
673,063 - -0.2
673,063 + +0.2
673,080 - -0.1
673,233 + -2.2
673,235 + -0.3
673,268 - +2.1
673,404 - -0.1
673,462 + -4.2
673,875 - 9586 mRNA_1218 0.30 -0.6
673,999 - 9586 mRNA_1218 0.37 -0.7
674,006 + 9586 mRNA_1218 0.38 +0.6
674,848 - 9586 mRNA_1218 0.88 -0.2
674,994 - +0.2

Or see this region's nucleotide sequence