Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1240

Experiment: Sorted High BODIPY Gate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9607 and 9608 are separated by 376 nucleotides9608 and 9609 are separated by 516 nucleotides mRNA_1239: 9607 - KOG0032 Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily, at 729,414 to 732,263 9607 mRNA_1240: 9608 - Interpro Protein of unknown function (DUF1275) 0, at 732,640 to 733,855 9608 mRNA_1241: 9609 - K12893 SFRS4_5_6 splicing factor, arginine/serine-rich 4/5/6, at 734,372 to 735,961 9609

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
remove
731,796 + 9607 mRNA_1239 0.84 -0.6
732,129 + -1.0
732,174 + -2.4
732,423 + -1.3
732,424 + -0.5
732,470 + +0.5
732,622 - -0.7
732,747 - -0.6
732,749 - +0.8
732,757 + +0.2
732,761 + -0.9
732,785 - 9608 mRNA_1240 0.12 -0.9
732,787 + 9608 mRNA_1240 0.12 -0.3
733,079 + 9608 mRNA_1240 0.36 -1.3
733,345 + 9608 mRNA_1240 0.58 +0.1
733,468 + 9608 mRNA_1240 0.68 -1.2
733,597 + 9608 mRNA_1240 0.79 +3.7
733,644 + 9608 mRNA_1240 0.83 -2.7
733,684 - 9608 mRNA_1240 0.86 -0.5
733,756 - -1.6
733,758 - -4.6
733,797 + -1.3
733,809 - -0.4
733,896 + -0.9
733,917 - -1.1
734,060 - +1.1
734,173 - -0.2
734,181 + -0.1
734,384 + -0.9

Or see this region's nucleotide sequence