Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1272

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9639 and 9640 are separated by 756 nucleotides9640 and 9641 are separated by 171 nucleotides mRNA_1271: 9639 - K05349 bglX beta-glucosidase, at 803,420 to 806,888 9639 mRNA_1272: 9640 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 807,645 to 808,575 9640 mRNA_1273: 9641 - BLAST priB [Histoplasma capsulatum H143], at 808,747 to 810,374 9641

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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806,674 + -1.1
806,676 - +0.1
806,830 + -0.2
807,271 + -0.2
807,273 - -0.3
807,294 - +0.9
807,296 - +0.4
807,300 + +0.3
807,300 + -1.5
807,388 + -0.2
807,399 + -1.0
807,412 - -2.7
807,425 + +0.3
807,545 - -0.0
807,663 + +0.5
807,706 - -0.7
807,714 - +0.0
807,864 + 9640 mRNA_1272 0.24 -1.0
807,870 + 9640 mRNA_1272 0.24 +3.1
807,997 + 9640 mRNA_1272 0.38 +2.9
808,140 - 9640 mRNA_1272 0.53 -1.3
808,400 - 9640 mRNA_1272 0.81 -0.6
808,400 - 9640 mRNA_1272 0.81 +0.4
808,476 - 9640 mRNA_1272 0.89 -0.4
808,566 - +0.2
808,910 + 9641 mRNA_1273 0.10 -2.2
809,289 - 9641 mRNA_1273 0.33 -0.3
809,369 + 9641 mRNA_1273 0.38 -0.0
809,488 - 9641 mRNA_1273 0.46 +1.8
809,571 - 9641 mRNA_1273 0.51 +0.2

Or see this region's nucleotide sequence