Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1335

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9702 and 9703 are separated by 291 nucleotides9703 and 9704 are separated by 310 nucleotides mRNA_1334: 9702 - HMMPfam-RNA polymerase II transcription elongation factor-PF09816, at 24,367 to 26,303 9702 mRNA_1335: 9703 - HMMPfam-Cysteine-rich TM module stress tolerance-PF12734, at 26,595 to 27,216 9703 mRNA_1336: 9704 - K01850 E5.4.99.5 chorismate mutase, at 27,527 to 28,944 9704

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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25,631 + 9702 mRNA_1334 0.65 -0.9
25,632 - 9702 mRNA_1334 0.65 -1.5
25,769 - 9702 mRNA_1334 0.72 -2.0
25,776 + 9702 mRNA_1334 0.73 -1.9
25,909 + 9702 mRNA_1334 0.80 -0.2
26,059 + 9702 mRNA_1334 0.87 +0.0
26,211 + -1.3
26,263 + -2.3
26,367 - -0.0
26,497 + -0.2
26,539 - -1.2
26,663 - 9703 mRNA_1335 0.11 +0.5
26,816 + 9703 mRNA_1335 0.36 -0.0
26,822 + 9703 mRNA_1335 0.36 -0.8
27,073 + 9703 mRNA_1335 0.77 -0.1
27,389 - +0.8
27,408 + +0.6
27,522 - -0.0

Or see this region's nucleotide sequence