Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1357

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9725 and 9726 are separated by 198 nucleotides mRNA_1357: 9725 - BLAST ATP-citrate synthase [Microbotryum lychnidis-dioicae ..., at 79,515 to 80,146 9725 mRNA_1358: 9726 - K01648 ACLY ATP citrate (pro-S)-lyase, at 80,345 to 84,761 9726

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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78,788 + -0.9
78,988 + -1.0
79,074 - +0.5
79,097 + +0.3
79,213 - -0.0
79,234 + -0.1
79,373 - -1.9
79,423 + -1.1
79,756 - 9725 mRNA_1357 0.38 -1.2
79,851 + 9725 mRNA_1357 0.53 +0.6
80,007 + 9725 mRNA_1357 0.78 +0.1
80,028 + 9725 mRNA_1357 0.81 +0.3
80,181 - -0.6
80,187 - -1.0
80,316 + -1.4
80,318 - -0.3

Or see this region's nucleotide sequence