Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1367

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9734 and 9735 are separated by 351 nucleotides9735 and 9736 are separated by 281 nucleotides mRNA_1366: 9734 - K00661 maa maltose O-acetyltransferase, at 105,397 to 106,460 9734 mRNA_1367: 9735 - K03233 EEF1G elongation factor 1-gamma, at 106,812 to 108,790 9735 mRNA_1368: 9736 - K03233 EEF1G elongation factor 1-gamma, at 109,072 to 110,968 9736

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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106,049 + 9734 mRNA_1366 0.61 +0.5
106,165 - 9734 mRNA_1366 0.72 -0.1
106,178 + 9734 mRNA_1366 0.73 -2.7
106,579 - -0.2
106,598 + -1.7
106,603 + -0.9
106,605 + -0.9
106,608 - -0.2
106,609 - +0.5
106,612 + -1.4
106,615 - -0.2
106,645 + -1.2
106,653 - +0.6
106,673 + +1.0
106,676 - +0.7
106,817 + +0.4
107,514 + 9735 mRNA_1367 0.35 -0.7
107,812 + 9735 mRNA_1367 0.51 +1.3
108,237 + 9735 mRNA_1367 0.72 +0.3
108,573 - 9735 mRNA_1367 0.89 -1.8
108,710 - -0.5
108,849 + -1.2
108,856 + -0.2
108,862 - -1.1
108,865 + +0.1
108,999 - -0.2

Or see this region's nucleotide sequence