Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1425

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9793 and 9794 are separated by 301 nucleotides mRNA_1425: 9793 - HMMPfam-Protein of unknown function (DUF4449)-PF14613,SUPERFAMILY--SSF55394, at 253,226 to 256,985 9793 mRNA_1426: 9794 - Hypothetical Protein, at 257,287 to 258,707 9794

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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252,581 + -0.8
252,782 - -0.3
252,866 + -3.8
252,872 + +0.2
252,880 - +0.8
253,009 + -1.5
253,019 - +0.3
253,021 - +0.0
253,021 + -1.3
253,099 - -0.1
253,106 + -1.3
253,129 - -2.6
253,152 + -0.4
253,168 - +0.4
253,170 + -1.4
253,176 - +0.2
253,179 + -0.5
253,179 + -0.4
253,201 + -2.8
253,677 - 9793 mRNA_1425 0.12 +1.5
254,649 - 9793 mRNA_1425 0.38 +0.3
255,149 + 9793 mRNA_1425 0.51 -0.5
255,470 + 9793 mRNA_1425 0.60 +1.2
255,977 - 9793 mRNA_1425 0.73 +0.1
255,993 + 9793 mRNA_1425 0.74 -0.1
256,012 + 9793 mRNA_1425 0.74 -1.7
256,048 + 9793 mRNA_1425 0.75 +2.4
256,111 + 9793 mRNA_1425 0.77 +0.1
256,259 - 9793 mRNA_1425 0.81 +1.9
256,413 - 9793 mRNA_1425 0.85 -1.5
256,440 - 9793 mRNA_1425 0.85 -2.5
256,534 + 9793 mRNA_1425 0.88 -0.6
256,993 - -1.2
257,627 + 9794 mRNA_1426 0.24 -1.5
257,783 + 9794 mRNA_1426 0.35 +0.3

Or see this region's nucleotide sequence