Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1448

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9816 and 9817 are separated by 377 nucleotides mRNA_1448: 9816 - KOG4159 Predicted E3 ubiquitin ligase, at 313,855 to 315,152 9816 mRNA_1449: 9817 - K03325 TC.ACR3 arsenite transporter, ACR3 family, at 315,530 to 317,378 9817

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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312,876 - -2.0
312,920 - -0.7
312,940 + -0.5
313,228 - -3.3
313,390 - -1.7
313,759 - -1.8
313,803 + -1.3
314,075 + 9816 mRNA_1448 0.17 -0.8
314,129 + 9816 mRNA_1448 0.21 -1.5
314,315 - 9816 mRNA_1448 0.35 -0.3
314,325 + 9816 mRNA_1448 0.36 -2.7
314,952 + 9816 mRNA_1448 0.85 -1.5
315,290 - -0.2
315,340 + +1.2
315,402 + +0.2
315,641 - -0.5
316,077 - 9817 mRNA_1449 0.30 -1.1
316,091 + 9817 mRNA_1449 0.30 -1.9
316,099 + 9817 mRNA_1449 0.31 -0.2

Or see this region's nucleotide sequence