Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1466

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9832 and 9833 are separated by 281 nucleotides9833 and 9834 are separated by 90 nucleotides9834 and 9835 are separated by 359 nucleotides mRNA_1464: 9832 - BLAST conidiation protein Con-6, putative [Aspergillus ..., at 351,662 to 352,112 9832 mRNA_1465: 9833 - Hypothetical Protein, at 352,394 to 352,564 9833 mRNA_1466: 9834 - BLAST putative catalytic domain thiamin pyrophosphokinase [..., at 352,655 to 354,087 9834 mRNA_1467: 9835 - HMMPfam-Mannosyl oligosaccharide glucosidase-PF03200,SUPERFAMILY--SSF48208, at 354,447 to 358,959 9835

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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351,688 - +0.9
351,907 + 9832 mRNA_1464 0.54 +0.1
352,467 + 9833 mRNA_1465 0.43 -2.1
352,633 + -1.8
352,659 + -0.1
352,660 - +0.6
352,671 - +1.2
352,679 + -0.3
352,814 + 9834 mRNA_1466 0.11 -0.4
352,942 - 9834 mRNA_1466 0.20 -0.1
353,092 - 9834 mRNA_1466 0.30 +0.4
353,093 + 9834 mRNA_1466 0.31 +0.7
353,973 - -1.8
353,985 + +0.0
354,103 - +0.0
354,124 - -0.7
354,184 + -0.4
354,210 + +1.4
354,220 - -0.8
354,232 - -1.2
354,241 - +0.2
354,252 + -0.0
354,297 - -1.2
354,339 - -0.4
354,341 + +0.1
354,360 + -0.5
354,365 + +0.4
354,382 + -2.3
354,411 + +0.1
354,424 - +0.1
354,433 - -0.3
354,514 + +0.4
354,540 + -0.3
354,543 + -0.4
354,552 + -0.3
354,592 + -1.1
354,689 - +0.3
354,713 - -0.3
354,720 - -0.2
354,740 + +0.5
354,814 + -0.9
354,859 - -0.5
354,864 + -1.4

Or see this region's nucleotide sequence