Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1475

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9842 and 9843 are separated by 478 nucleotides mRNA_1474: 9842 - Hypothetical Protein, at 388,451 to 391,356 9842 mRNA_1475: 9843 - K07374 TUBA tubulin alpha, at 391,835 to 393,525 9843

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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391,012 + 9842 mRNA_1474 0.88 +0.2
391,137 - -0.4
391,292 + +0.0
391,424 - -1.6
391,445 + -2.1
391,445 - +0.3
391,567 + -0.6
391,588 - -1.3
391,594 + -1.0
393,511 - +1.1
393,817 - -1.1
393,828 - -0.9
394,130 + -0.2
394,130 + -0.0
394,142 + +0.8
394,283 + -0.4
394,284 - -0.3
394,288 + -2.1
394,310 + +1.8
394,315 + -0.7
394,315 - -0.1
394,451 - +1.0
394,458 - +1.3
394,462 - -1.8
394,491 + +1.1

Or see this region's nucleotide sequence