Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1506

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9873 and 9874 are separated by 485 nucleotides9874 and 9875 are separated by 652 nucleotides mRNA_1505: 9873 - Hypothetical Protein, at 467,466 to 468,083 9873 mRNA_1506: 9874 - Hypothetical Protein, at 468,569 to 469,292 9874 mRNA_1507: 9875 - HMMPfam-Cupin domain-PF07883,SUPERFAMILY--SSF51182, at 469,945 to 470,941 9875

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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467,597 + 9873 mRNA_1505 0.21 -1.1
467,672 + 9873 mRNA_1505 0.33 +0.3
467,677 + 9873 mRNA_1505 0.34 +0.0
467,685 - 9873 mRNA_1505 0.35 -2.7
467,735 - 9873 mRNA_1505 0.44 -0.9
467,738 + 9873 mRNA_1505 0.44 -0.1
467,752 + 9873 mRNA_1505 0.46 +0.2
467,905 - 9873 mRNA_1505 0.71 +0.7
467,995 + 9873 mRNA_1505 0.86 -0.0
468,040 + -2.6
468,143 - -2.0
468,180 + -2.0
468,183 - +0.5
468,185 - +0.3
468,195 + +0.0
468,204 + -3.4
468,210 + -0.2
468,220 - -0.0
468,221 - +0.1
468,254 + -0.4
468,338 + +0.3
468,357 + +0.6
468,361 - +0.3
468,365 + -1.9
468,463 + -0.7
468,541 + -0.8
468,660 - 9874 mRNA_1506 0.13 +1.5
469,709 - +0.6
469,768 + -1.2
469,779 - +0.2
469,856 + -2.4
469,874 - -2.0
469,883 + -1.8
469,976 - -1.1
469,999 - +0.3
470,135 + 9875 mRNA_1507 0.19 +0.5
470,240 - 9875 mRNA_1507 0.30 -0.0
470,253 + 9875 mRNA_1507 0.31 -0.3

Or see this region's nucleotide sequence