Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1529

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9896 and 9897 are separated by 368 nucleotides mRNA_1528: 9896 - K06030 MFN mitofusin, at 517,044 to 520,163 9896 mRNA_1529: 9897 - K12605 CNOT2, NOT2 CCR4-NOT transcription complex subunit 2, at 520,532 to 522,546 9897

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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520,204 + -0.2
520,231 - -1.0
520,336 - -0.4
520,533 - +0.9
520,544 - +0.7
520,633 - -0.2
521,569 + 9897 mRNA_1529 0.51 +0.8
521,995 + 9897 mRNA_1529 0.73 -0.3
522,591 + +1.9
522,599 + -2.3
522,607 + +0.4
522,621 + -0.7
522,628 - -2.7
522,746 + +0.1
522,775 - -0.2
522,900 - -1.4
523,199 + -1.1
523,215 + -0.6
523,218 - -1.9

Or see this region's nucleotide sequence