Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1551

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9919 and 9920 are separated by 385 nucleotides mRNA_1551: 9919 - HMMPfam-Ferritin-like domain-PF13668,SUPERFAMILY--SSF47240, at 571,932 to 573,047 9919 mRNA_1552: 9920 - K03115 CSNK2B casein kinase II subunit beta, at 573,433 to 575,580 9920

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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570,946 + -1.3
571,044 - +1.0
571,191 - -2.1
571,212 + +1.3
571,239 + -0.6
571,343 - -1.1
571,468 + -0.9
571,491 - +0.3
571,510 - -0.4
571,516 + -0.9
571,525 - -0.0
571,536 + -1.3
571,561 - +0.3
571,591 + +0.0
571,619 - +0.5
571,643 - +1.6
571,646 - +0.5
571,655 + -1.1
571,674 + -1.0
571,676 + +0.1
571,711 + -0.2
571,809 - -1.2
571,816 - -0.0
571,818 - -1.6
571,956 + +1.0
571,960 - -0.8
572,105 + 9919 mRNA_1551 0.16 -0.4
572,306 - 9919 mRNA_1551 0.34 -1.2
572,346 - 9919 mRNA_1551 0.37 -0.7
572,547 + 9919 mRNA_1551 0.55 +0.4
572,564 - 9919 mRNA_1551 0.57 -0.0
572,685 + 9919 mRNA_1551 0.67 +1.0
572,882 - 9919 mRNA_1551 0.85 -0.4
572,899 + 9919 mRNA_1551 0.87 +0.1
573,586 + -1.4
573,648 + 9920 mRNA_1552 0.10 -1.1
573,680 - 9920 mRNA_1552 0.11 -0.4
573,988 - 9920 mRNA_1552 0.26 -0.4

Or see this region's nucleotide sequence