Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1556

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9923 and 9924 are separated by 84 nucleotides9924 and 9925 are separated by 172 nucleotides mRNA_1555: 9923 - K18703 SUGCT succinate---hydroxymethylglutarate CoA-transferase, at 585,061 to 586,995 9923 mRNA_1556: 9924 - KOG3114 Uncharacterized conserved protein, at 587,080 to 588,305 9924 mRNA_1557: 9925 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383, at 588,478 to 590,403 9925

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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586,368 + 9923 mRNA_1555 0.68 -1.6
586,858 + -1.8
587,619 + 9924 mRNA_1556 0.44 +0.8
587,660 - 9924 mRNA_1556 0.47 +0.0
587,794 - 9924 mRNA_1556 0.58 -0.5
588,088 - 9924 mRNA_1556 0.82 -0.6
588,557 + +1.2
588,845 + 9925 mRNA_1557 0.19 -2.4
589,243 - 9925 mRNA_1557 0.40 +2.5
589,262 + 9925 mRNA_1557 0.41 +1.6
589,268 + 9925 mRNA_1557 0.41 +0.2

Or see this region's nucleotide sequence