Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1690

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10057 and 10058 are separated by 321 nucleotides mRNA_1689: 10057 - KOG1286 Amino acid transporters, at 897,050 to 899,959 10057 mRNA_1690: 10058 - BLAST putative transmembrane protein [Rhizoctonia solani 123E], at 900,281 to 902,715 10058

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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899,401 - 10057 mRNA_1689 0.81 -0.1
899,708 + -1.8
899,864 + -1.1
900,288 + +0.4
900,723 - 10058 mRNA_1690 0.18 +0.2
901,034 - 10058 mRNA_1690 0.31 +0.2
901,631 + 10058 mRNA_1690 0.55 +0.1
901,869 - 10058 mRNA_1690 0.65 +0.4
901,909 - 10058 mRNA_1690 0.67 -0.0
902,225 - 10058 mRNA_1690 0.80 +0.0
902,471 - 10058 mRNA_1690 0.90 -1.9
902,715 - +0.1
902,740 - -0.2
902,743 - -0.6
902,752 + -0.0
902,758 - +0.8
902,891 - +0.4
902,898 - -0.1
902,915 - -0.4
903,628 - -1.0

Or see this region's nucleotide sequence