Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1699

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10066 and 10067 are separated by 252 nucleotides10067 and 10068 are separated by 258 nucleotides mRNA_1698: 10066 - K11493 RCC1 regulator of chromosome condensation, at 920,689 to 923,433 10066 mRNA_1699: 10067 - K10751 CHAF1B chromatin assembly factor 1 subunit B, at 923,686 to 926,901 10067 mRNA_1700: 10068 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 927,160 to 928,283 10068

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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923,463 - -0.7
923,464 + -0.8
923,632 - -1.3
923,635 - +1.0
923,639 + -0.4
923,648 + +0.1
923,658 + +0.4
924,195 + 10067 mRNA_1699 0.16 +1.5
924,935 - 10067 mRNA_1699 0.39 -0.1
925,233 - 10067 mRNA_1699 0.48 +1.8
925,680 + 10067 mRNA_1699 0.62 +0.6
925,760 - 10067 mRNA_1699 0.64 +1.6
926,791 - -0.4
926,808 + -0.1
927,066 - -0.6
927,098 - +0.1
927,217 + -0.4
927,342 - 10068 mRNA_1700 0.16 -0.6
927,398 + 10068 mRNA_1700 0.21 +0.1
927,424 - 10068 mRNA_1700 0.23 -2.9
927,551 + 10068 mRNA_1700 0.35 +0.5
927,678 + 10068 mRNA_1700 0.46 +0.3
927,824 + 10068 mRNA_1700 0.59 -0.0
927,840 + 10068 mRNA_1700 0.60 +0.1
927,872 + 10068 mRNA_1700 0.63 +1.1

Or see this region's nucleotide sequence