Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1722

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10089 and 10090 are separated by 540 nucleotides mRNA_1721: 10089 - K11483 HOS2 histone deacetylase HOS2, at 32,428 to 34,334 10089 mRNA_1722: 10090 - KOG0065 Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily, at 34,875 to 37,390 10090

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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34,606 + -0.0
34,704 + -0.8
34,710 + -0.4
34,717 + -0.8
34,753 - -1.1
34,868 + -0.7
34,948 - -0.8
35,013 - -0.3
35,040 + +0.7
35,159 - 10090 mRNA_1722 0.11 +0.7
35,168 + 10090 mRNA_1722 0.12 -0.1
35,466 + 10090 mRNA_1722 0.23 +0.0
35,672 + 10090 mRNA_1722 0.32 -0.2
35,841 + 10090 mRNA_1722 0.38 -0.1
36,014 + 10090 mRNA_1722 0.45 +0.0
36,174 - 10090 mRNA_1722 0.52 -0.0
36,204 + 10090 mRNA_1722 0.53 -0.4
36,285 + 10090 mRNA_1722 0.56 +1.9
36,292 + 10090 mRNA_1722 0.56 -0.7
36,324 + 10090 mRNA_1722 0.58 -0.7
36,375 + 10090 mRNA_1722 0.60 +0.3
36,465 + 10090 mRNA_1722 0.63 -1.4
36,602 + 10090 mRNA_1722 0.69 -0.5
36,611 + 10090 mRNA_1722 0.69 -0.3
36,720 - 10090 mRNA_1722 0.73 -1.4
36,746 + 10090 mRNA_1722 0.74 +1.3
36,965 + 10090 mRNA_1722 0.83 +0.1
37,032 - 10090 mRNA_1722 0.86 -0.6
37,050 - 10090 mRNA_1722 0.86 -0.2
37,145 + +0.0
37,166 + +0.4
37,194 - -1.4
37,194 + +0.1
37,356 + -1.0
37,457 + -0.2
37,470 + -0.2
37,473 + -1.4
37,476 + +0.9
37,481 + -0.4
37,501 + -1.3
37,595 + -0.4
37,628 + +0.3
37,631 + -0.3
37,660 + -0.6
37,703 - +0.2
37,717 - -1.0
37,735 - -0.7
37,831 - -0.4
37,837 + -0.9
37,921 - -0.2
37,933 - -0.7
37,934 + -0.9
37,934 + -0.8
37,938 + -0.4
37,950 - +0.8
37,951 + +0.3
37,984 - +0.5
38,063 + +0.8
38,063 - -0.8
38,074 - -0.0
38,075 - -2.2
38,083 + -1.0
38,091 - -0.5
38,140 - -0.2
38,248 - -0.3
38,249 - +1.0
38,366 + +0.0
38,384 + +0.2

Or see this region's nucleotide sequence