Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1724

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10091 and 10092 are separated by 619 nucleotides mRNA_1723: 10091 - KOG4157 beta-1,6-N-acetylglucosaminyltransferase, contains WSC domain, at 38,655 to 42,471 10091 mRNA_1724: 10092 - K08827 PRPF4B serine/threonine-protein kinase PRP4, at 43,091 to 44,788 10092

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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42,146 + -0.5
42,171 + -1.7
42,198 + -0.2
42,285 - +0.1
42,287 - +0.3
42,298 + -0.1
42,311 + +1.4
42,354 - -1.2
42,357 - -0.8
42,445 - +0.2
42,592 - -0.2
42,597 + +0.7
42,614 - -1.2
42,623 + -0.6
42,627 - +0.1
42,632 + +0.7
42,637 - -0.6
42,637 - -0.2
42,638 + +0.0
42,644 + -0.1
42,650 + -0.1
42,652 - -0.6
42,660 + -0.3
42,677 - +0.3
42,684 - -0.1
42,714 - -0.0
42,717 + -2.1
42,729 + -0.1
42,737 - -1.1
42,769 - -0.0
42,778 - +0.6
42,782 + +0.2
42,788 + -2.6
42,808 - -1.1
42,824 - -3.3
42,825 + -0.1
42,825 - -0.1
42,826 - -0.7
42,829 + +0.8
42,832 + +0.1
42,839 + +0.9
42,845 - +0.3
42,846 - -0.2
42,847 - -0.8
42,847 - -0.7
42,868 + +0.3
42,874 + -0.7
42,901 + +0.2
42,912 - -2.0
42,923 - -1.5
42,925 - -0.9
42,999 - -0.7
43,027 - -1.3
43,050 + +0.7
45,611 + -0.1

Or see this region's nucleotide sequence