Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1735

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10102 and 10103 are separated by 963 nucleotides mRNA_1734: 10102 - KOG1721 FOG Zn-finger, at 67,947 to 72,087 10102 mRNA_1735: 10103 - K03235 EF3, TEF3 elongation factor 3, at 73,051 to 76,843 10103

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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72,165 + -0.0
72,196 - +0.4
72,213 + +0.2
72,285 - +0.7
72,774 + -0.3
72,827 + +0.3
72,899 - +0.9
76,924 + +0.2
76,936 - -0.1
76,938 - +0.1
76,941 + -1.8
76,952 + +0.9
76,962 + +0.1
77,075 + -0.3
77,091 - +1.3
77,105 + -0.2
77,109 - -0.1
77,111 - +0.1
77,176 - -0.0
77,221 - +1.3
77,224 - +0.7
77,234 + +0.3
77,241 + -0.3
77,242 + +0.0
77,251 + +0.3
77,251 + +0.2
77,256 + +1.0
77,260 - +1.0
77,261 + +0.4
77,262 + -0.1
77,262 - +0.6
77,291 + +0.2
77,294 - +0.2
77,295 - +1.5
77,324 + +0.4
77,334 - +0.6
77,339 - +0.1
77,345 - +0.8
77,350 - -0.0
77,350 + -0.3
77,351 + -0.3
77,353 + -0.0
77,360 + -0.1
77,373 - +0.3
77,374 - -0.5
77,386 + -0.5
77,394 - +0.2
77,396 + +0.2
77,399 - +1.6
77,400 + +0.2
77,400 + +0.1
77,407 + +0.1
77,412 - +0.7
77,421 + -0.3
77,422 + -0.2
77,425 + +0.9
77,427 + -0.6
77,427 + +0.4
77,434 + -0.4
77,717 + -0.7
77,722 + +0.4

Or see this region's nucleotide sequence