Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1769

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10136 and 10137 are separated by 756 nucleotides10137 and 10138 are separated by 355 nucleotides mRNA_1768: 10136 - K01858 INO1, ISYNA1 myo-inositol-1-phosphate synthase, at 156,346 to 158,351 10136 mRNA_1769: 10137 - Interpro F-box-like 0, at 159,108 to 161,176 10137 mRNA_1770: 10138 - HMMPfam-F-box-like-PF12937, at 161,532 to 163,380 10138

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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158,117 + 10136 mRNA_1768 0.88 -0.2
158,121 - 10136 mRNA_1768 0.88 +0.5
158,230 - +0.5
158,550 + +0.4
158,554 + -0.6
158,571 + -0.4
158,585 + -0.8
158,671 + -0.2
158,704 - +0.0
158,711 - -1.1
158,724 - +0.3
158,736 - -1.9
158,738 + -0.3
158,741 + -0.1
158,758 + -0.6
158,834 - +0.8
158,845 - +0.4
158,856 + -0.6
158,859 - +0.8
158,867 - -0.5
158,867 + -0.3
158,875 + -0.2
158,879 - -1.6
158,879 + -0.3
158,900 + +0.3
158,901 - +0.3
158,914 + -0.7
158,915 - -1.3
158,976 - +0.5
158,981 + -1.2
158,982 - -0.3
158,987 + -0.5
158,988 - -0.2
158,992 - +0.1
158,995 + +0.4
158,999 + +0.3
159,001 - +0.4
159,010 - +0.5
159,011 + -0.5
159,017 + -1.0
159,022 + +0.7
159,036 + -3.2
159,036 + -3.1
159,042 + +1.0
159,055 + +0.4
159,183 - +0.7
159,225 + +0.8
159,329 - 10137 mRNA_1769 0.11 +0.4
159,339 - 10137 mRNA_1769 0.11 -0.7
159,348 + 10137 mRNA_1769 0.12 +0.2
159,449 - 10137 mRNA_1769 0.16 -0.4
159,456 + 10137 mRNA_1769 0.17 +1.5
159,509 - 10137 mRNA_1769 0.19 -0.3
159,511 + 10137 mRNA_1769 0.19 -1.3
159,516 - 10137 mRNA_1769 0.20 +0.1
159,528 + 10137 mRNA_1769 0.20 +0.3
159,544 + 10137 mRNA_1769 0.21 -0.4
159,572 + 10137 mRNA_1769 0.22 +0.9
159,589 - 10137 mRNA_1769 0.23 -0.1
159,630 - 10137 mRNA_1769 0.25 -0.4
159,646 + 10137 mRNA_1769 0.26 -0.5
159,660 - 10137 mRNA_1769 0.27 -0.4
159,660 - 10137 mRNA_1769 0.27 -0.3
159,715 - 10137 mRNA_1769 0.29 -0.2
159,720 + 10137 mRNA_1769 0.30 -0.4
159,735 - 10137 mRNA_1769 0.30 +1.0
159,754 + 10137 mRNA_1769 0.31 -0.7
159,927 + 10137 mRNA_1769 0.40 -0.6
159,927 + 10137 mRNA_1769 0.40 -0.1
160,143 + 10137 mRNA_1769 0.50 -0.1
160,204 + 10137 mRNA_1769 0.53 -1.0
160,209 + 10137 mRNA_1769 0.53 -0.2
160,219 + 10137 mRNA_1769 0.54 +0.2
160,222 - 10137 mRNA_1769 0.54 -1.2
160,548 - 10137 mRNA_1769 0.70 +0.0
160,594 - 10137 mRNA_1769 0.72 -1.4
160,813 - 10137 mRNA_1769 0.82 -0.2
160,821 + 10137 mRNA_1769 0.83 -0.0
161,141 - +0.7

Or see this region's nucleotide sequence