Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1798

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10165 and 10166 are separated by 513 nucleotides10166 and 10167 are separated by 149 nucleotides mRNA_1797: 10165 - KOG2641 Predicted seven transmembrane receptor - rhodopsin family, at 222,381 to 224,884 10165 mRNA_1798: 10166 - KOG0725 Reductases with broad range of substrate specificities, at 225,398 to 226,777 10166 mRNA_1799: 10167 - KOG2489 Transmembrane protein, at 226,927 to 229,515 10167

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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224,528 + 10165 mRNA_1797 0.86 +0.1
224,706 - +0.2
224,972 - -0.0
225,147 - +0.1
225,292 + -0.1
225,304 + -1.0
225,313 + -1.0
225,317 + +0.4
225,326 - -1.3
225,327 + -0.1
225,330 - -0.7
225,332 + +0.3
225,333 - +0.8
225,475 + +1.2
225,486 - -1.1
225,600 - 10166 mRNA_1798 0.15 -0.5
225,629 + 10166 mRNA_1798 0.17 -0.0
225,915 + 10166 mRNA_1798 0.37 +0.0
225,955 + 10166 mRNA_1798 0.40 -0.0
226,375 + 10166 mRNA_1798 0.71 +0.0
226,382 + 10166 mRNA_1798 0.71 +1.5
226,465 + 10166 mRNA_1798 0.77 -0.2
227,104 - -0.5
227,305 + 10167 mRNA_1799 0.15 -0.9
227,717 + 10167 mRNA_1799 0.31 +0.5

Or see this region's nucleotide sequence