Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1825

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10192 and 10193 are separated by 659 nucleotides10193 and 10194 are separated by 224 nucleotides mRNA_1824: 10192 - Hypothetical Protein, at 301,582 to 303,988 10192 mRNA_1825: 10193 - KOG0039 Ferric reductase, NADH/NADPH oxidase and related proteins, at 304,648 to 308,455 10193 mRNA_1826: 10194 - Hypothetical Protein, at 308,680 to 309,068 10194

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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303,973 - -0.1
304,091 + -0.3
304,129 - +0.6
304,163 + -0.6
304,242 + -0.5
304,246 + -0.3
304,262 - +1.6
304,270 - -0.0
304,282 - +0.8
304,411 + -0.2
304,415 - -0.3
304,429 + +0.1
304,565 - +0.3
304,585 + +0.3
304,881 + -0.1
305,174 + 10193 mRNA_1825 0.14 -0.9
305,255 + 10193 mRNA_1825 0.16 +0.1
305,412 - 10193 mRNA_1825 0.20 -0.2
305,457 - 10193 mRNA_1825 0.21 -0.9
305,582 - 10193 mRNA_1825 0.25 -0.4
305,615 + 10193 mRNA_1825 0.25 -0.6
305,835 + 10193 mRNA_1825 0.31 -0.2
305,869 + 10193 mRNA_1825 0.32 -0.8
306,542 - 10193 mRNA_1825 0.50 -2.2
306,551 + 10193 mRNA_1825 0.50 -2.5
307,160 - 10193 mRNA_1825 0.66 +0.7
307,406 + 10193 mRNA_1825 0.72 -1.8
307,466 - 10193 mRNA_1825 0.74 +0.9
307,760 + 10193 mRNA_1825 0.82 -0.5
307,792 + 10193 mRNA_1825 0.83 -0.2
308,037 - 10193 mRNA_1825 0.89 -0.1
308,507 - +0.2
308,633 + +1.1
308,647 + +0.4
308,654 - -0.2
308,777 - 10194 mRNA_1826 0.25 -0.1
308,780 - 10194 mRNA_1826 0.26 -0.7
308,789 + 10194 mRNA_1826 0.28 -0.8
308,847 + 10194 mRNA_1826 0.43 -1.5
308,991 - 10194 mRNA_1826 0.80 -0.4

Or see this region's nucleotide sequence