Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1838

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10205 and 10206 are separated by 433 nucleotides10206 and 10207 are separated by 100 nucleotides mRNA_1837: 10205 - K00281 GLDC, gcvP glycine dehydrogenase, at 331,991 to 335,971 10205 mRNA_1838: 10206 - K04486 E3.1.3.15B histidinol-phosphatase (PHP family), at 336,405 to 337,627 10206 mRNA_1839: 10207 - Hypothetical Protein, at 337,728 to 339,625 10207

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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335,576 - +0.5
335,583 + +1.1
335,714 + -2.3
335,879 - +0.7
336,115 + -0.4
336,144 + -0.2
336,153 + -0.4
336,183 - +0.4
336,314 - +1.0
336,324 - -0.4
336,332 + +0.5
336,472 - -1.3
337,638 - -0.1
338,096 + 10207 mRNA_1839 0.19 +1.6
338,214 + 10207 mRNA_1839 0.26 -1.2
338,532 + 10207 mRNA_1839 0.42 -1.2
338,609 + 10207 mRNA_1839 0.46 -1.7

Or see this region's nucleotide sequence