Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1845

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10212 and 10213 are separated by 493 nucleotides10213 and 10214 are separated by 244 nucleotides mRNA_1844: 10212 - K16066 ydfG 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase, at 353,890 to 355,492 10212 mRNA_1845: 10213 - K06127 COQ5 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, at 355,986 to 356,917 10213 mRNA_1846: 10214 - KOG2458 Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif, at 357,162 to 359,735 10214

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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355,019 - 10212 mRNA_1844 0.70 -0.3
355,374 - -0.8
355,389 + -0.6
355,389 - +1.0
355,429 + +1.6
355,441 + +0.6
355,536 - -0.8
355,543 + -0.4
355,551 + -0.7
355,622 + +1.0
356,934 - -0.0
357,121 - -0.5
357,148 - +0.9
357,384 - -0.2
357,728 + 10214 mRNA_1846 0.22 -0.4

Or see this region's nucleotide sequence