Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1847

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10214 and 10215 are separated by 575 nucleotides10215 and 10216 are separated by 640 nucleotides mRNA_1846: 10214 - KOG2458 Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif, at 357,162 to 359,735 10214 mRNA_1847: 10215 - BLAST GDP-fucose protein O-fucosyltransferase [Rhizopogon v..., at 360,311 to 362,309 10215 mRNA_1848: 10216 - BLAST PC-Esterase [Xanthophyllomyces dendrorhous], at 362,950 to 364,987 10216

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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359,459 + 10214 mRNA_1846 0.89 -0.2
359,471 - 10214 mRNA_1846 0.90 -0.2
359,473 + 10214 mRNA_1846 0.90 -0.5
359,492 + -0.4
359,503 + +0.5
359,595 - -0.8
359,598 + -0.8
359,606 + -0.3
359,609 - +1.2
359,624 + -0.7
359,731 - -0.5
359,759 - -0.0
359,776 + -0.8
359,781 - +0.5
359,786 + -0.2
359,788 + +0.1
359,902 + -0.4
359,902 - +0.1
359,909 + +0.4
359,912 + +2.1
359,915 + -0.7
359,954 + -0.1
359,961 - -0.2
360,001 + -0.2
360,003 - -0.2
360,003 + -0.1
360,022 - -1.0
360,032 + +0.7
360,047 + -2.0
360,051 + -0.2
360,057 - +0.4
360,060 + -0.1
360,070 - -0.0
360,071 + +1.0
360,073 + -0.5
360,077 + -0.3
360,087 + -0.2
360,093 - -0.6
360,093 + -0.3
360,105 + -0.2
360,105 + +0.7
360,115 - +0.5
360,132 + -0.2
360,135 - +0.5
360,140 - -0.0
360,147 + -0.2
360,148 - -0.6
360,148 - +0.1
360,148 - -0.5
360,149 + -0.6
360,150 - +0.0
360,151 + +0.3
360,151 + -1.5
360,156 + +0.7
360,156 + +0.0
360,157 + +0.1
360,160 - -0.5
360,160 + -0.2
360,161 - +0.1
360,161 + +0.4
360,161 - +0.5
360,165 + -0.1
360,168 + -0.1
360,171 + -0.8
360,175 + +0.5
360,175 + -0.6
360,177 + -1.3
360,177 + +1.4
360,181 - -1.4
360,181 - -1.0
360,186 - -0.4
360,187 + -0.0
360,192 - -1.7
360,199 - -1.0
360,201 + +0.2
360,203 - -0.0
360,203 + -0.7
360,203 - -0.1
360,204 - -0.1
360,204 + -0.1
360,204 + -0.1
360,205 - +0.5
360,213 - +0.4
360,224 - -1.5
360,232 - -0.4
360,233 + -0.0
360,237 + +0.4
360,241 + -2.4
360,241 + -0.9
360,242 + +0.0
360,242 - +0.4
360,243 - +0.7
360,244 - -0.3
360,244 - -0.7
360,246 + -1.2
360,246 + -0.3
360,246 + -0.6
360,249 + -0.2
360,249 - -1.3
360,251 + -4.0
360,251 + -0.4
360,252 + -3.9
360,254 - -0.2
360,256 + +0.1
360,260 + -0.8
360,260 - -0.4
360,263 + -0.6
360,264 - -0.1
360,265 + -0.7
360,267 - +0.2
360,268 + +0.0
360,268 + -0.3
360,268 + +0.2
360,268 + -0.3
360,269 + +0.2
360,269 - +1.2
360,272 - -1.2
360,274 - -0.8
360,276 - +0.4
360,277 - -0.4
360,280 - -0.0
360,285 - -0.9
360,290 + -0.6
360,304 + +0.1
360,417 - +2.3
360,431 - -0.3
360,442 + -1.1
360,558 + 10215 mRNA_1847 0.12 -1.0
360,691 - 10215 mRNA_1847 0.19 -0.7
360,875 - 10215 mRNA_1847 0.28 +0.4
360,892 - 10215 mRNA_1847 0.29 -0.5
361,162 - 10215 mRNA_1847 0.43 -0.5
361,289 + 10215 mRNA_1847 0.49 +0.1
361,905 - 10215 mRNA_1847 0.80 +0.6
361,912 + 10215 mRNA_1847 0.80 -0.6
361,933 + 10215 mRNA_1847 0.81 +0.4
362,009 - 10215 mRNA_1847 0.85 -0.8
362,329 + -0.7
362,352 - -0.4
362,382 - -0.9
362,404 - -0.4
362,488 - -0.2
362,489 - -0.6
362,509 - -0.1
362,516 + +2.0
362,518 - -1.2
362,519 - -1.7
362,527 + -0.2
362,538 - +0.2
362,541 + +0.5
362,545 + +0.8
362,545 + -0.8
362,555 + -0.3
362,557 + -0.2
362,559 + +0.3
362,560 - -0.3
362,564 - +0.5
362,567 - +0.0
362,571 - -0.3
362,571 + -0.2
362,584 - -0.9
362,589 + +0.4
362,605 - -1.3
362,628 - -0.1
362,639 - +0.2
362,640 + +0.3
362,641 + -0.4
362,643 + -0.4
362,644 + +0.2
362,647 - +0.1
362,676 - -0.4
362,676 + -0.0
362,689 - -0.4
362,692 + -0.1
362,693 + -0.2
362,698 - -0.4
362,698 - -0.1
362,702 - -0.5
362,708 + +0.4
362,717 - +0.3
362,717 + +0.0
362,721 - +0.0
362,726 - +0.8
362,731 - +0.2
362,732 + -0.3
362,735 - +0.2
362,750 + -0.6
362,751 + +0.8
362,752 + -0.1
362,753 + +0.0
362,753 + -1.6
362,758 - -0.2
362,764 - -0.4
362,766 - -0.4
362,775 + +0.0
362,775 - +0.4
362,776 + +0.2
362,778 + +0.9
362,789 + -0.4
362,797 - +0.0
362,801 + -0.8
362,803 + -0.2
362,812 + -1.5
362,813 + +0.7
362,911 + -1.8
362,912 - -0.0
362,945 - +0.1
362,949 - -0.7
363,058 + -0.8
363,086 - +0.4
363,093 + -0.1
363,097 - +0.7
363,230 - 10216 mRNA_1848 0.14 +0.3
363,257 + 10216 mRNA_1848 0.15 -0.1

Or see this region's nucleotide sequence