Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1850

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10218 and 10219 are separated by 721 nucleotides mRNA_1850: 10218 - K00311 ETFDH electron-transferring-flavoprotein dehydrogenase, at 368,575 to 371,026 10218 mRNA_1851: 10219 - BLAST cell wall surface anchor family protein [Moniliop..., at 371,748 to 376,200 10219

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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367,649 + -0.3
367,654 - -0.3
367,655 + -0.0
367,671 + -0.3
367,693 + -1.1
367,713 + -0.7
367,717 - -0.8
367,726 + +0.9
367,728 + +0.5
367,747 - -0.4
367,748 - +0.1
367,755 + +0.2
367,757 + -0.0
367,773 - -0.4
367,774 - +0.2
367,779 - -0.0
367,784 + -0.1
367,789 + +0.9
367,895 + -0.8
367,898 - +0.2
367,909 + -0.4
367,909 - -0.8
367,912 - -0.2
367,916 - -0.5
367,921 - +0.9
367,936 + +0.6
367,939 + -0.6
367,940 + -1.0
367,940 - -0.5
367,960 + -2.9
367,962 + -0.1
367,968 - -0.7
367,985 - -0.2
367,994 + -0.6
367,998 + -0.1
368,031 - -0.3
368,051 + +0.1
368,055 - -0.5
368,064 - -0.7
368,067 + -0.2
368,085 - -0.2
368,109 + -0.4
368,120 - -1.9
368,146 + -0.6
368,407 - -0.6
368,691 - +0.1
368,761 - -1.9
369,010 - 10218 mRNA_1850 0.18 -1.9
369,307 - 10218 mRNA_1850 0.30 -1.1
370,172 + 10218 mRNA_1850 0.65 -3.0
370,188 - 10218 mRNA_1850 0.66 -1.9
370,489 - 10218 mRNA_1850 0.78 -1.9
370,754 - 10218 mRNA_1850 0.89 -1.6
370,768 + 10218 mRNA_1850 0.89 -1.8
370,915 - -0.4
370,922 - -1.3
370,923 - -1.4
371,044 - -0.5
371,045 - +0.5
371,052 + -0.3
371,052 - -0.4
371,054 + -0.0
371,060 + -1.5
371,060 - +0.4
371,063 + +0.8
371,072 - -0.2
371,073 + -0.4
371,073 - -0.3
371,076 - -0.4
371,077 + -0.5
371,080 + -0.7
371,084 + -2.5
371,089 - -0.5
371,090 + -0.8
371,097 + -0.5
371,168 - +0.4
371,219 + -1.0
371,239 + -0.2
371,253 + -0.5
371,382 + +1.0
371,382 - -2.0
371,383 - +0.2
371,392 + -0.9
371,392 + -1.2
371,394 - -0.6
371,394 - -0.4
371,518 - +0.0
371,528 + +0.8
371,648 + -2.6
371,804 - +0.1

Or see this region's nucleotide sequence