Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1893

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10260 and 10261 are separated by 653 nucleotides10261 and 10262 are separated by 361 nucleotides mRNA_1892: 10260 - K15743 CES3_5 carboxylesterase 3/5, at 445,526 to 447,987 10260 mRNA_1893: 10261 - HMMPfam-Amidohydrolase-PF04909,SUPERFAMILY--SSF51556, at 448,641 to 450,220 10261 mRNA_1894: 10262 - K01253 EPHX1 microsomal epoxide hydrolase, at 450,582 to 452,258 10262

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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447,756 + -0.7
448,125 - +0.5
448,136 + +0.8
448,278 + -0.9
448,288 - +0.8
448,309 + +0.3
448,556 - -0.8
448,566 + -1.0
448,588 + -0.9
448,606 - +1.0
448,713 + +0.0
448,720 + -1.1
448,722 + -0.3
448,730 - -0.5
448,740 + +0.4
449,038 + 10261 mRNA_1893 0.25 +0.6
449,110 - 10261 mRNA_1893 0.30 -1.0
449,209 + 10261 mRNA_1893 0.36 -0.3
449,467 - 10261 mRNA_1893 0.52 +0.8
449,486 + 10261 mRNA_1893 0.53 +0.3
449,764 - 10261 mRNA_1893 0.71 +1.2
449,776 + 10261 mRNA_1893 0.72 +0.3
449,916 - 10261 mRNA_1893 0.81 -0.4
450,199 - +0.2
450,314 - -0.6
450,331 + -0.2
450,348 - -0.1
450,521 + +0.4
450,665 - -0.2
450,671 + -0.6
450,672 - -1.3
450,676 + -0.2
450,695 + -0.1

Or see this region's nucleotide sequence