Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1916

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10283 and 10284 are separated by 78 nucleotides10284 and 10285 are separated by 301 nucleotides mRNA_1915: 10283 - K03063 PSMC4, RPT3 26S proteasome regulatory subunit T3, at 506,230 to 507,925 10283 mRNA_1916: 10284 - HMMPfam-bZIP transcription factor-PF00170,HMMPfam-Domain of unknown function (DUF3425)-PF11905,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 508,004 to 509,890 10284 mRNA_1917: 10285 - K04488 iscU, nifU nitrogen fixation protein NifU and related proteins, at 510,192 to 511,246 10285

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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507,920 + -0.4
507,927 + +0.1
508,043 - -0.8
508,043 + -0.2
508,504 + 10284 mRNA_1916 0.26 -0.1
509,354 + 10284 mRNA_1916 0.72 -1.0
509,488 - 10284 mRNA_1916 0.79 +0.1
509,628 - 10284 mRNA_1916 0.86 -0.2
509,771 - -1.6
509,890 - -1.1
509,930 - -0.6
510,245 + +0.3

Or see this region's nucleotide sequence