Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1925

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10292 and 10293 are separated by 166 nucleotides10293 and 10294 are separated by 221 nucleotides mRNA_1924: 10292 - K00763 pncB, NAPRT1 nicotinate phosphoribosyltransferase, at 521,294 to 523,495 10292 mRNA_1925: 10293 - K13239 PECI peroxisomal 3,2-trans-enoyl-CoA isomerase, at 523,662 to 525,143 10293 mRNA_1926: 10294 - HMMPfam-GDSL-like Lipase/Acylhydrolase family-PF13472,SUPERFAMILY--SSF52266, at 525,365 to 527,827 10294

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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522,744 + 10292 mRNA_1924 0.66 +0.1
523,142 - 10292 mRNA_1924 0.84 +1.7
523,148 + 10292 mRNA_1924 0.84 -1.3
523,304 + -0.4
523,423 + +2.8
523,585 - -0.4
523,935 + 10293 mRNA_1925 0.18 -1.2
524,175 + 10293 mRNA_1925 0.35 -0.8
524,320 - 10293 mRNA_1925 0.44 -1.7
524,589 + 10293 mRNA_1925 0.63 -0.5
524,806 + 10293 mRNA_1925 0.77 +0.2
524,885 - 10293 mRNA_1925 0.83 -0.4
525,056 - -0.9
525,189 - -0.1
525,191 + +0.7
525,205 + -0.7
525,209 - -0.4
525,217 - -0.2
525,218 - +1.6
525,219 - -0.5
525,222 - -0.0
525,227 + -0.7
525,230 - -2.2
525,232 + -0.4
525,245 - -1.4
525,245 + +0.3
525,256 + +0.0
525,260 + +0.8
525,266 + +1.5
525,267 + -0.1
525,272 + +1.0
525,272 - -0.6
525,280 - -1.1
525,297 + +0.5
525,298 - -0.1
525,322 + +0.7
525,414 + -0.7
525,871 - 10294 mRNA_1926 0.21 -0.1

Or see this region's nucleotide sequence