Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1934

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10301 and 10302 are separated by 500 nucleotides10302 and 10303 are separated by 267 nucleotides mRNA_1933: 10301 - Hypothetical Protein, at 545,451 to 545,690 10301 mRNA_1934: 10302 - HMMPfam-Cryptococcal mannosyltransferase 1-PF11735, at 546,191 to 548,410 10302 mRNA_1935: 10303 - K00654 SPT serine palmitoyltransferase, at 548,678 to 550,878 10303

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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545,378 + -0.4
545,507 - 10301 mRNA_1933 0.23 -0.3
545,522 + 10301 mRNA_1933 0.30 -0.7
545,531 + 10301 mRNA_1933 0.33 -0.2
545,539 + 10301 mRNA_1933 0.37 -0.9
545,627 + 10301 mRNA_1933 0.73 -0.1
545,632 + 10301 mRNA_1933 0.75 -0.1
545,656 - 10301 mRNA_1933 0.85 -0.1
545,677 + +1.2
545,678 + -0.6
545,789 - -2.7
545,801 - +0.0
545,804 - -0.8
545,808 + +0.4
545,808 + +1.2
545,815 - -0.8
545,818 + +1.1
545,819 + -0.9
545,843 + -0.8
545,845 + +0.1
545,846 + -0.2
545,869 - +1.6
545,932 + -0.6
545,965 - -1.2
545,983 + -1.5
545,986 - -0.2
546,008 - -0.5
546,269 - +0.9
546,683 + 10302 mRNA_1934 0.22 -0.0
546,687 - 10302 mRNA_1934 0.22 +1.2
546,840 - 10302 mRNA_1934 0.29 +1.9
546,842 + 10302 mRNA_1934 0.29 -0.3
546,873 - 10302 mRNA_1934 0.31 -0.3
547,097 - 10302 mRNA_1934 0.41 -0.9
547,106 + 10302 mRNA_1934 0.41 -0.8
547,595 - 10302 mRNA_1934 0.63 -0.5
547,684 + 10302 mRNA_1934 0.67 +1.5
547,713 - 10302 mRNA_1934 0.69 +0.9
547,724 - 10302 mRNA_1934 0.69 +0.4
548,003 + 10302 mRNA_1934 0.82 +0.3
548,007 - 10302 mRNA_1934 0.82 +0.5
548,051 + 10302 mRNA_1934 0.84 +0.7
548,162 - 10302 mRNA_1934 0.89 -2.8
548,168 - 10302 mRNA_1934 0.89 -2.2
548,170 + 10302 mRNA_1934 0.89 +2.2
548,214 + +0.1
548,301 - +1.4
548,304 + +1.5
548,311 - -1.1
548,317 - +0.9
548,322 - -0.8
548,464 - +0.0
548,467 - +0.9
548,472 + -0.3
548,472 + -0.6
548,482 - +0.5
548,585 - -0.1
548,589 + +0.1
548,589 - -0.3
548,591 + -0.4
548,607 + +0.3
548,611 - +0.7
548,613 - -1.1
548,613 + +0.7
548,617 - -0.1
548,618 + -1.9
548,619 + +0.2
548,619 + +0.6

Or see this region's nucleotide sequence