Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1949

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10316 and 10317 are separated by 491 nucleotides mRNA_1948: 10316 - K08176 PHO84 MFS transporter, PHS family, inorganic phosphate transporter, at 580,409 to 582,858 10316 mRNA_1949: 10317 - KOG0254 Predicted transporter (major facilitator superfamily), at 583,350 to 585,589 10317

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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582,858 + -0.3
582,866 + -0.7
582,871 - -0.1
582,882 + -1.6
583,075 + -0.2
583,127 - -0.5
583,402 + +0.6
583,847 + 10317 mRNA_1949 0.22 -0.1
584,446 - 10317 mRNA_1949 0.49 -2.1
585,015 + 10317 mRNA_1949 0.74 -0.7
585,282 + 10317 mRNA_1949 0.86 +0.6
585,282 + 10317 mRNA_1949 0.86 -0.1
585,283 - 10317 mRNA_1949 0.86 +0.5
585,297 - 10317 mRNA_1949 0.87 +0.6
585,426 - -0.6
585,427 + -0.6
585,436 - -0.6
585,450 + +0.5
585,455 - +0.4
585,460 + +0.1
585,469 + +0.3
585,584 - +0.3
585,595 - -0.8
585,599 - -1.0
585,729 - -0.0
585,737 - -0.9
585,947 + -0.4
586,188 - +0.2

Or see this region's nucleotide sequence