Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1966

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10334 and 10335 are separated by 303 nucleotides mRNA_1966: 10334 - K09522 DNAJC2 DnaJ homolog subfamily C member 2, at 628,186 to 629,960 10334 mRNA_1967: 10335 - BLAST proteophosphoglycan 5 [Moniliophthora roreri MCA ..., at 630,264 to 633,467 10335

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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627,654 + -0.1
627,670 + +0.9
627,670 + -0.5
627,672 + -0.6
627,809 + +0.2
627,813 + -0.1
627,813 - -0.1
627,819 - +0.2
627,823 - +0.3
629,991 - +0.5
630,281 + -0.6
630,428 - +0.0
630,568 - -0.4
630,852 - 10335 mRNA_1967 0.18 -0.6

Or see this region's nucleotide sequence