Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1971

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10339 and 10340 are separated by 539 nucleotides mRNA_1971: 10339 - K02429 fucP MFS transporter, FHS family, L-fucose permease, at 642,692 to 644,646 10339 mRNA_1972: 10340 - K20301 TRAPPC2, TRS20 trafficking protein particle complex subunit 2, at 645,186 to 645,812 10340

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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641,693 - -1.9
641,693 - -0.1
641,698 + -1.4
641,702 + -0.5
641,703 - -0.1
641,707 + +1.1
641,708 + +0.0
641,711 - -0.1
641,763 - -0.2
641,769 + +0.7
641,803 + -0.3
641,815 + -0.4
641,831 - -0.8
641,854 - -0.2
641,865 - -0.8
641,887 - -0.1
641,904 + +0.4
641,908 - +0.4
641,946 - -1.0
641,949 + -0.4
641,971 - -0.5
641,988 + -0.3
641,995 + +0.2
641,996 + +0.8
642,001 + +0.3
642,019 - -2.3
642,026 - -0.7
642,027 - -0.3
642,033 - -1.1
642,037 + +0.2
642,037 - -0.6
642,039 + -1.4
642,049 + +0.0
642,071 + -0.5
642,091 - +1.3
642,092 + +1.0
642,174 - +0.9
642,188 - -0.2
642,189 + +0.5
642,190 + +0.6
642,198 - +0.1
642,204 + -1.2
642,208 + -0.1
642,209 - -0.6
642,217 + +0.3
642,220 + -0.6
642,222 + +0.1
642,229 + +0.4
642,248 - -0.8
642,279 - -1.3
642,294 - -0.2
642,296 - -0.6
642,301 - -0.3
642,307 + +0.4
642,319 + -1.1
642,331 + -2.0
642,339 + +1.2
642,344 - -0.7
642,349 + -1.3
642,359 - -0.5
642,367 - +0.3
642,379 - +0.1
642,381 + -1.2
642,385 + +0.2
642,390 + -0.3
642,393 - +1.4
642,396 + +1.8
642,396 - -0.4
642,407 - -0.9
642,411 - +0.5
642,419 + -0.6
642,426 - -0.5
642,436 - -0.3
642,441 + +0.9
642,445 - +0.1
642,448 - -0.1
642,452 + +0.1
642,453 - +0.4
642,490 + -0.3
642,550 - +0.3
642,579 + +0.3
642,610 - -2.5
642,931 - 10339 mRNA_1971 0.12 +0.7
643,292 + 10339 mRNA_1971 0.31 -2.1
643,761 - 10339 mRNA_1971 0.55 -0.2
643,783 - 10339 mRNA_1971 0.56 +0.7
644,298 - 10339 mRNA_1971 0.82 -0.3
644,317 + 10339 mRNA_1971 0.83 -0.1

Or see this region's nucleotide sequence