Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1976

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10343 and 10344 are separated by 405 nucleotides10344 and 10345 are separated by 173 nucleotides mRNA_1975: 10343 - K12350 SMPD1, ASM sphingomyelin phosphodiesterase, at 651,585 to 654,888 10343 mRNA_1976: 10344 - Hypothetical Protein, at 655,294 to 656,131 10344 mRNA_1977: 10345 - HMMPfam-Eukaryotic initiation factor 4E-PF01652,SUPERFAMILY--SSF55418, at 656,305 to 657,635 10345

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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654,309 + 10343 mRNA_1975 0.82 -2.6
654,315 - 10343 mRNA_1975 0.83 -3.2
654,348 - 10343 mRNA_1975 0.84 +0.8
654,624 - -0.1
654,656 - -0.3
654,920 + -1.8
655,205 + +0.1
655,376 - -1.0
655,501 - 10344 mRNA_1976 0.25 -0.1

Or see this region's nucleotide sequence