Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1998

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10365 and 10366 are separated by 487 nucleotides10366 and 10367 are separated by 451 nucleotides mRNA_1997: 10365 - KOG0627 Heat shock transcription factor, at 702,510 to 703,691 10365 mRNA_1998: 10366 - K08869 ADCK, ABC1 aarF domain-containing kinase, at 704,179 to 706,336 10366 mRNA_1999: 10367 - Hypothetical Protein, at 706,788 to 707,404 10367

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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703,819 + -0.8
703,907 - +0.3
703,919 - +1.8
704,071 - -0.6
704,098 - -0.0
704,101 + +0.4
704,114 + -0.1
704,249 - +0.1
704,254 + +0.3
704,296 - +1.0
704,544 - 10366 mRNA_1998 0.17 -0.7
704,554 + 10366 mRNA_1998 0.17 -0.3
704,565 - 10366 mRNA_1998 0.18 -1.1
704,672 - 10366 mRNA_1998 0.23 -0.2
705,128 + 10366 mRNA_1998 0.44 -0.3
705,327 + 10366 mRNA_1998 0.53 -0.2
705,583 - 10366 mRNA_1998 0.65 +1.5
705,708 + 10366 mRNA_1998 0.71 -0.2
705,920 - 10366 mRNA_1998 0.81 -0.0
706,128 - +0.2
706,447 + +1.5
706,849 + -0.1
706,897 + 10367 mRNA_1999 0.18 -1.1
706,914 + 10367 mRNA_1999 0.20 -0.5
706,916 + 10367 mRNA_1999 0.21 -1.1
707,071 + 10367 mRNA_1999 0.46 -0.4

Or see this region's nucleotide sequence