Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2030

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10397 and 10398 are separated by 288 nucleotides mRNA_2029: 10397 - K07088 K07088 uncharacterized protein, at 784,732 to 786,233 10397 mRNA_2030: 10398 - KOG2260 Cell division cycle 37 protein, CDC37, at 786,522 to 787,329 10398

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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785,699 + 10397 mRNA_2029 0.64 -1.2
785,701 - 10397 mRNA_2029 0.65 -1.4
785,702 + 10397 mRNA_2029 0.65 +0.4
785,857 + 10397 mRNA_2029 0.75 -0.3
786,329 + +0.2
786,348 - -1.6
786,627 - 10398 mRNA_2030 0.13 -1.2
786,716 + 10398 mRNA_2030 0.24 +0.2
786,807 - 10398 mRNA_2030 0.35 +0.6
786,874 + 10398 mRNA_2030 0.44 -0.1
787,075 - 10398 mRNA_2030 0.68 +0.2
787,101 - 10398 mRNA_2030 0.72 -0.8
787,225 - 10398 mRNA_2030 0.87 +0.3
787,269 - -0.1
787,554 + -3.0
787,761 + -0.9
787,919 + +0.7
788,006 + +0.5
788,008 - -1.3
788,070 - +1.2
788,088 + +0.6

Or see this region's nucleotide sequence