Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2043

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10410 and 10411 are separated by 924 nucleotides10411 and 10412 are separated by 480 nucleotides mRNA_2042: 10410 - K11228 STE11 mitogen-activated protein kinase kinase kinase, at 818,580 to 819,652 10410 mRNA_2043: 10411 - Hypothetical Protein, at 820,577 to 820,768 10411 mRNA_2044: 10412 - HMMPfam-Domain of unknown function (DUF1793)-PF08760,SUPERFAMILY--SSF48208, at 821,249 to 824,656 10412

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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819,650 - +1.6
819,922 + +0.6
819,943 + +2.3
819,944 - -0.9
819,950 - -1.0
819,993 + -0.2
820,019 - +0.0
820,077 - -1.6
820,092 - +0.3
820,128 + -0.2
820,822 - -0.6
820,941 - +0.4
820,942 + +0.2
820,943 + -0.1
820,958 + -1.2
821,104 - -1.1
821,137 + -0.6
821,140 + -0.6
821,163 + -1.8
821,166 + -1.0
821,176 - +0.6
821,179 + +0.0
821,179 + -0.0
821,228 + -1.6
821,343 + +0.2
821,630 + 10412 mRNA_2044 0.11 -0.4
821,723 + 10412 mRNA_2044 0.14 +0.1

Or see this region's nucleotide sequence