Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2173

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10540 and 10541 are separated by 524 nucleotides10541 and 10542 are separated by 452 nucleotides mRNA_2172: 10540 - K00968 PCYT1 choline-phosphate cytidylyltransferase, at 249,604 to 252,159 10540 mRNA_2173: 10541 - K03950 NDUFA6 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 6, at 252,684 to 253,574 10541 mRNA_2174: 10542 - K14009 BCAP31, BAP31 B-cell receptor-associated protein 31, at 254,027 to 255,180 10542

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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252,595 + +0.3
252,896 - 10541 mRNA_2173 0.24 +1.2
252,922 - 10541 mRNA_2173 0.27 -0.1
253,488 - +1.1
253,623 + -1.3
254,393 + 10542 mRNA_2174 0.32 +0.4
254,503 - 10542 mRNA_2174 0.41 -1.1
254,530 + 10542 mRNA_2174 0.44 -0.2
254,560 - 10542 mRNA_2174 0.46 -0.4
254,566 - 10542 mRNA_2174 0.47 +0.0

Or see this region's nucleotide sequence