Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2178

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10545 and 10546 are separated by 405 nucleotides mRNA_2177: 10545 - Hypothetical Protein, at 264,370 to 265,030 10545 mRNA_2178: 10546 - Hypothetical Protein, at 265,436 to 267,124 10546

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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264,534 + 10545 mRNA_2177 0.25 +0.0
264,547 - 10545 mRNA_2177 0.27 +0.7
264,686 + 10545 mRNA_2177 0.48 -0.4
264,790 - 10545 mRNA_2177 0.64 -0.2
264,972 + +0.6
265,429 + -0.3
265,603 + -0.8
265,603 + -2.1
265,629 + 10546 mRNA_2178 0.11 -0.8
265,661 - 10546 mRNA_2178 0.13 -0.2
265,697 - 10546 mRNA_2178 0.15 +0.3
266,012 - 10546 mRNA_2178 0.34 +1.3
266,040 + 10546 mRNA_2178 0.36 -0.4
266,114 - 10546 mRNA_2178 0.40 +0.3
266,146 - 10546 mRNA_2178 0.42 -0.1
266,274 - 10546 mRNA_2178 0.50 +0.1
266,347 + 10546 mRNA_2178 0.54 -0.7
266,487 - 10546 mRNA_2178 0.62 +0.6
266,497 + 10546 mRNA_2178 0.63 +0.3
266,548 + 10546 mRNA_2178 0.66 +1.2
266,551 - 10546 mRNA_2178 0.66 +0.8
266,604 + 10546 mRNA_2178 0.69 -0.5
266,873 - 10546 mRNA_2178 0.85 -0.4
267,016 + -0.6
267,031 + -0.5
267,072 - +0.5
267,085 + -0.4
267,087 - -0.8
267,180 - +0.5
267,185 + -2.0
267,372 - -0.5
267,514 - -0.6
267,523 + +0.4
267,642 - -0.6
267,682 + +0.2
267,714 + -0.0
267,777 + -0.3
267,957 - +0.2
267,965 - +0.2
267,970 + +0.1
267,973 - +0.2
267,976 + +1.3
267,990 + +0.2
268,073 - -0.0

Or see this region's nucleotide sequence