Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2181

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_2181: 10549 - K11423 SETD2, SET2 histone-lysine N-methyltransferase SETD2, at 278,274 to 281,386 10549

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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277,633 + -0.6
277,642 - -0.4
277,650 - -0.3
277,665 + +0.3
278,073 + +1.8
278,075 + +0.9
278,085 + +0.9
278,129 + -0.6
278,383 - -0.3
278,385 - +0.2
278,490 + +0.5
278,510 - -0.4
278,516 + -0.6
278,528 - -1.1
278,531 - -0.1
278,784 - 10549 mRNA_2181 0.16 -0.8
278,841 + 10549 mRNA_2181 0.18 +0.4
279,128 - 10549 mRNA_2181 0.27 -0.2
279,249 + 10549 mRNA_2181 0.31 +1.0
279,449 - 10549 mRNA_2181 0.38 -0.7
279,515 - 10549 mRNA_2181 0.40 -0.2
279,528 + 10549 mRNA_2181 0.40 -0.7
279,994 - 10549 mRNA_2181 0.55 -3.6
280,115 - 10549 mRNA_2181 0.59 -0.4
280,144 + 10549 mRNA_2181 0.60 +0.1
280,165 + 10549 mRNA_2181 0.61 -1.5
280,173 - 10549 mRNA_2181 0.61 -0.2
280,400 - 10549 mRNA_2181 0.68 -0.2
280,556 - 10549 mRNA_2181 0.73 +1.0
280,579 + 10549 mRNA_2181 0.74 -1.2
280,871 - 10549 mRNA_2181 0.83 +0.3
281,110 + -0.8
281,340 + +0.0
281,364 - -1.2
281,396 - -1.8
281,408 + -0.3
281,418 - -1.0
281,451 - +0.9
281,469 + -0.9
281,476 - +0.3
281,479 + -0.1
281,486 - +0.3
281,488 + -0.0
281,498 + -0.1
281,499 + +0.5
281,515 - +0.4
281,748 + -0.3
281,795 - +0.3
281,801 - -0.0
281,924 - -1.9
282,256 + -1.2
282,373 - -0.5
282,379 + +0.2

Or see this region's nucleotide sequence