Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2185

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10552 and 10553 are separated by 768 nucleotides mRNA_2184: 10552 - Hypothetical Protein, at 286,236 to 287,917 10552 mRNA_2185: 10553 - HMMPfam-Copper fist DNA binding domain-PF00649,PRINTS-Copper fist domain signature-PR00617,ProSiteProfiles-Copper-fist DNA-binding domain profile.-PS50073,SMART-Copper-Fist-SM00412,SMART--SM01090,SUPERFAMILY--SSF57879, at 288,686 to 288,844 10553

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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288,160 - +0.1
288,421 + -0.7
288,477 - -0.4
288,484 + -0.9
288,546 + +1.0
288,557 - -0.7
288,561 - -0.2
288,568 + -1.6
288,591 + -0.6
288,622 + -0.0
288,626 - +0.2
288,632 + +0.2
288,640 + -0.1
288,652 + -0.5
288,669 + -0.0
288,716 - 10553 mRNA_2185 0.19 +0.9
288,717 - 10553 mRNA_2185 0.19 +0.2
288,733 + 10553 mRNA_2185 0.30 -0.4
288,784 - 10553 mRNA_2185 0.62 +1.2
288,883 - +0.2
288,891 + +0.8
288,919 + +0.0
289,047 + -0.7
289,195 - -1.3
289,201 - -0.0
289,214 + +1.1
289,220 - -0.5
289,224 - -0.7
289,334 - +0.6
289,353 - +0.4
289,354 + -0.9
289,363 + +0.3
289,368 + +0.1
289,371 + +0.4
289,375 + +0.0
289,471 - +0.0
289,473 + +0.1
289,502 - -0.9
289,625 - -0.8
289,649 + -0.1
289,810 - -0.3

Or see this region's nucleotide sequence